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  5. OT_09G03540.1

OT_09G03540.1


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_09G03540.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020614.39 tig00020614_g12152.t1 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder
EOD21201 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD24257 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
EOD37408 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD38972 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
XM_002499964.1 MICPUN_99013, 99013 SNF2 super family (RAD54B) 0.04 OrthoFinder
XM_003059512.1 MicpuC2_1194, 1194 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 611 706
IPR000330 SNF2_N 281 581
No external refs found!