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  5. OT_09G02900.1

OT_09G02900.1


Description : ATP-dependent RNA helicase Ski2, C-terminal; rRNA-processing arch domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_09G02900.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.02 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.01 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.02 OrthoFinder
XM_002506163.1 MICPUN_88392, 88392 ATP-dependent RNA helicase Ski2, C-terminal;... 0.03 OrthoFinder
lcl|BLLF01003501.1_cds_GFH27512.1_21989 HaLaN_25843, GFH27512 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05917.1_5938 PRW05917 Superkiller viralicidic activity 2-like 2 isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 898 1069
IPR011545 DEAD/DEAH_box_helicase_dom 146 292
IPR025696 rRNA_proc-arch_dom 610 870
No external refs found!