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  5. OT_09G02250.1

OT_09G02250.1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0003998 (OrthoFinder) Phylogenetic Tree(s): OG0003998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_09G02250.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.15 tig00001003_g6272.t1 No description available 0.01 OrthoFinder
Cre01.g036100 30788803 No description available 0.06 OrthoFinder
EOD26802 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
Transcript_contig_1667 1667 WD40 repeat [Interproscan]. 0.02 OrthoFinder
UNPLg00207.t1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
XM_003059195.1 MicpuC2_47557, 47557 WD40 repeat [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494444.1_2974 KAA8494444 Denticleless protein-like 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 269 297
IPR001680 WD40_repeat 376 416
IPR001680 WD40_repeat 426 458
No external refs found!