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  5. OT_08G02470.1

OT_08G02470.1


Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_08G02470.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre01.g025900 30789384 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre05.g230600 30783444 External stimuli response.light.UV-B light.UVR8 photoreceptor 0.03 OrthoFinder
Cz14g02070.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.05 OrthoFinder
Dusal.0071s00015.1 33185715 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
EOD07392 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Sro188_g081280.1 Contig1383.g12729 RCC1 and BTB domain-containing protein 2 0.03 OrthoFinder
Sro670_g184710.1 Contig318.g4223 RCC1 and BTB domain-containing protein 2 0.03 OrthoFinder
Vocar.0006s0269.1 32893895 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01005733.1_cds_GFH31570.1_26047 HaLaN_30640, GFH31570 ANK_REP_REGION domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 358 406
IPR000408 Reg_chr_condens 509 557
IPR000408 Reg_chr_condens 249 298
IPR000408 Reg_chr_condens 561 590
IPR000408 Reg_chr_condens 410 440
No external refs found!