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  5. OT_07G01560.1

OT_07G01560.1


Description : Ribosomal protein L27 [Interproscan].


Gene families : OG_01_0000894 (OrthoFinder) Phylogenetic Tree(s): OG0000894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_07G01560.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021428.4 tig00021428_g21145.t1 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum 0.02 OrthoFinder
Cpa|evm.model.tig00022075.47 tig00022075_g23608.t1 50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder
Cre01.g053600 30788479 No description available 0.02 OrthoFinder
Cre06.g300800 30778964, PRPL27 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana 0.23 OrthoFinder
Cz08g09200.t1 No alias Ribosomal protein L27 [Interproscan]. 0.16 OrthoFinder
Dusal.1029s00008.1 33196318 Ribosomal protein L27 [Interproscan]. 0.05 OrthoFinder
Sro1328_g263130.1 Contig1099.g10653 Protein L27 0.03 OrthoFinder
Sro51_chlor_g029890.1 Rpl27 Rpl27 0.09 OrthoFinder
TPCG01990.1 No alias Ribosomal protein L27 [Interproscan]. 0.04 OrthoFinder
TPCG03010.1 No alias Ribosomal protein L27 [Interproscan]. 0.04 OrthoFinder
Transcript_contig_89636 89636 Ribosomal protein L27 [Interproscan]. 0.04 OrthoFinder
Vocar.0001s0304.1 32885658 Ribosomal protein L27 [Interproscan]. 0.05 OrthoFinder
XM_002499554.1 MICPUN_56110, 56110 Ribosomal protein L27 (RPL27) 0.08 OrthoFinder
lcl|BLLF01003179.1_cds_GFH26609.1_21086 HaLaN_24785, GFH26609 50S ribosomal protein L27 0.04 OrthoFinder
lcl|BLLF01003289.1_cds_GFH26922.1_21399 HaLaN_25156, GFH26922 50S ribosomal protein L27 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56434.1_9704 PRW56434 50S ribosomal L27 isoform A 0.01 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32583.1_3993 PRW32583 50S ribosomal L27 0.14 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001684 Ribosomal_L27 34 113
No external refs found!