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  5. OT_06G03080.1

OT_06G03080.1


Description : Cold-shock protein, DNA-binding [Interproscan].


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_06G03080.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.17 tig00000169_g11886.t1 External stimuli response.temperature.Csd... 0.01 OrthoFinder
EOD19461 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD32667 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0155.1 32890859 Cold-shock protein, DNA-binding; RNA recognition motif... 0.04 OrthoFinder
lcl|BLLF01001239.1_cds_GFH18032.1_12509 HaLaN_14767, GFH18032 CSD-domain-containing protein 0.02 OrthoFinder
lcl|BLLF01001334.1_cds_GFH18656.1_13133 HaLaN_15496, GFH18656 PAP2_C domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57393.1_9401 PRW57393 Phosphatidylinositol:ceramide inositolphosphotransferase... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 12 78
No external refs found!