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  5. OT_06G02550.1

OT_06G02550.1


Description : 5'-3' exonuclease, alpha-helical arch, N-terminal; DNA polymerase I-like, H3TH domain [Interproscan].


Gene families : OG_01_0000954 (OrthoFinder) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_06G02550.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Cz04g01260.t1 No alias DNA-directed DNA polymerase, family A, palm domain... 0.02 OrthoFinder
Transcript_contig_90850 90850 5'-3' exonuclease, alpha-helical arch, N-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR020046 5-3_exonucl_a-hlix_arch_N 16 169
IPR020045 DNA_polI_H3TH 192 277
No external refs found!