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  5. OT_06G02540.1

OT_06G02540.1


Description : Actin family [Interproscan].


Gene families : OG_01_0000106 (OrthoFinder) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_06G02540.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.83 tig00020961_g16703.t1 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cz12g02080.t1 No alias Actin family [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54960 54960 Actin family [Interproscan]. 0.01 OrthoFinder
XM_002504830.1 MICPUN_62425, 62425 Actin superfamily 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR004000 Actin 213 347
IPR004000 Actin 44 179
No external refs found!