OT_06G01520.1

Description : 40S ribosomal protein S11, N-terminal; Ribosomal protein S17/S11 [Interproscan].

Gene families : OG_01_0003480 (OrthoFinder) Phylogenetic Tree(s): OG0003480_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: OT_06G01520.1
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000551.22	tig00000551_g2043.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.28	OrthoFinder
Cre12.g514500	30792578, RPS11	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	OrthoFinder
Cz02g12020.t1	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.19	OrthoFinder
Dusal.0778s00006.1	33199653	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.04	OrthoFinder
EOD05251	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.23	OrthoFinder
PTI_12G03740.1	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.27	OrthoFinder
Sro154_g070110.1	Contig2716.g21889	40S ribosomal protein S11	0.37	OrthoFinder
TP05G00420.1	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.25	OrthoFinder
Vocar.0006s0303.1	32893913	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.03	OrthoFinder
XM_002501400.1	MICPUN_81184, 81184	Ribosomal protein	0.32	OrthoFinder
XM_003059434.1	MicpuC2_33883, 33883	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.2	OrthoFinder
lcl\|BLLF01002834.1_cds_GFH25508.1_19985	HaLaN_23487, GFH25508	40S ribosomal protein S11	0.03	OrthoFinder
lcl\|BLLF01005325.1_cds_GFH31049.1_25526	HaLaN_30009, GFH31049	Ribosomal_S17_N domain-containing protein	0.15	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61173.1_440	PRW61173	40S ribosomal S11	0.24	OrthoFinder
lcl\|VRMN01000015.1_cds_KAA8491213.1_5841	KAA8491213	40S ribosomal protein S11	0.19	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003746	translation elongation factor activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006417	regulation of translation	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006448	regulation of translational elongation	IEP	Enrichment
BP	GO:0006449	regulation of translational termination	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009893	positive regulation of metabolic process	IEP	Enrichment
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Enrichment
BP	GO:0010628	positive regulation of gene expression	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Enrichment
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Enrichment
MF	GO:0043022	ribosome binding	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
MF	GO:0044877	protein-containing complex binding	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0045727	positive regulation of translation	IEP	Enrichment
BP	GO:0045901	positive regulation of translational elongation	IEP	Enrichment
BP	GO:0045905	positive regulation of translational termination	IEP	Enrichment
BP	GO:0048518	positive regulation of biological process	IEP	Enrichment
BP	GO:0048522	positive regulation of cellular process	IEP	Enrichment
BP	GO:0051130	positive regulation of cellular component organization	IEP	Enrichment
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051246	regulation of protein metabolic process	IEP	Enrichment
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	66
IPR000266	Ribosomal_S17/S11	68	134

External Links

No external refs found!

OT_06G01520.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation