Description : RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 [Interproscan].

Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: OT_06G01070.1
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020816.89 tig00020816_g14180.t1 RNA biosynthesis.organelle... 0.02 OrthoFinder
Cre03.g194950 30787419, RPOD RNA biosynthesis.organelle... 0.02 OrthoFinder
Dusal.0049s00001.1 33200334 RNA polymerase sigma-70 region 4; RNA polymerase... 0.03 OrthoFinder
EOD07614 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
PTI_01G06160.1 No alias RNA polymerase sigma-70 region 4; RNA polymerase... 0.03 OrthoFinder
PTI_02G05290.1 No alias RNA polymerase sigma-70 region 2; RNA polymerase... 0.02 OrthoFinder
Sro1407_g270010.1 Contig1773.g15694 Sigma factor SigA 0.02 OrthoFinder
Sro151_g069270.1 Contig294.g3853 Sigma factor SigA 0.02 OrthoFinder
Sro461_g147730.1 Contig3552.g27427 Sigma factor SigA 0.02 OrthoFinder
TP06G02100.1 No alias RNA polymerase sigma-70 region 2 [Interproscan]. 0.04 OrthoFinder
Vocar.0035s0101.1 32896910 RNA polymerase sigma-70 region 4; RNA polymerase... 0.05 OrthoFinder
XM_002505219.1 MICPUN_109173, 109173 RNA polymerase sigma-70 region 2; RNA polymerase... 0.03 OrthoFinder
XM_003060305.1 MicpuC2_19393, 19393 RNA polymerase sigma-70 region 4; RNA polymerase... 0.02 OrthoFinder
lcl|BLLF01000587.1_cds_GFH13205.1_7682 HaLaN_09040, GFH13205 RNA_pol_sigma70 domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 392 462
IPR007630 RNA_pol_sigma70_r4 561 614
IPR009042 RNA_pol_sigma70_r1_2 312 343
IPR007624 RNA_pol_sigma70_r3 473 547
No external refs found!