OT_06G01030.1

Description : Ribosomal protein L13 [Interproscan].

Gene families : OG_01_0000958 (OrthoFinder) Phylogenetic Tree(s): OG0000958_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: OT_06G01030.1
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020912.24	tig00020912_g15798.t1	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana	0.04	OrthoFinder
Cre06.g264350	30779581, PRPL13	Protein biosynthesis.organelle translation...	0.27	OrthoFinder
Cre09.g405200	30781496, MRPL13	Protein biosynthesis.organelle translation...	0.06	OrthoFinder
Cz11g15150.t1	No alias	Ribosomal protein L13 [Interproscan].	0.18	OrthoFinder
Dusal.0422s00009.1	33186843	Ribosomal protein L13 [Interproscan].	0.02	OrthoFinder
Sro874_g214140.1	Contig589.g7365	Protein L13	0.06	OrthoFinder
TPCG02710.1	No alias	Ribosomal protein L13 [Interproscan].	0.03	OrthoFinder
Transcript_contig_89766	89766	Ribosomal protein L13 [Interproscan].	0.02	OrthoFinder
Vocar.0002s0545.1	32890832	Ribosomal protein L13 [Interproscan].	0.08	OrthoFinder
Vocar.0062s0012.1	32892907	Ribosomal protein L13 [Interproscan].	0.02	OrthoFinder
XM_002501391.1	MICPUN_97280, 97280	Ribosomal protein L13 [Interproscan].	0.22	OrthoFinder
XM_003059440.1	MicpuC2_27251, 27251	Ribosomal protein L13 [Interproscan].	0.1	OrthoFinder
XM_003062638.1	MicpuC2_7563, 7563	Ribosomal protein L13 [Interproscan].	0.05	OrthoFinder
lcl\|LHPG02000021.1_cds_PRW20835.1_5043	PRW20835	50S ribosomal chloroplastic	0.13	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003746	translation elongation factor activity	IEP	Enrichment
MF	GO:0003919	FMN adenylyltransferase activity	IEP	Enrichment
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006414	translational elongation	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006528	asparagine metabolic process	IEP	Enrichment
BP	GO:0006529	asparagine biosynthetic process	IEP	Enrichment
BP	GO:0006766	vitamin metabolic process	IEP	Enrichment
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Enrichment
BP	GO:0006771	riboflavin metabolic process	IEP	Enrichment
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Enrichment
BP	GO:0009110	vitamin biosynthetic process	IEP	Enrichment
BP	GO:0009231	riboflavin biosynthetic process	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Enrichment
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Enrichment
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
BP	GO:0044283	small molecule biosynthetic process	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	70	194

External Links

No external refs found!

OT_06G01030.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation