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  5. OT_06G00690.1

OT_06G00690.1


Description : Histone-binding protein RBBP4, N-terminal; WD40 repeat [Interproscan].


Gene families : OG_01_0002321 (OrthoFinder) Phylogenetic Tree(s): OG0002321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_06G00690.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001493.9 tig00001493_g8984.t1 No description available 0.04 OrthoFinder
Cre17.g724850 30782603 WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.09 OrthoFinder
Cz06g32260.t1 No alias Histone-binding protein RBBP4, N-terminal [Interproscan]. 0.03 OrthoFinder
Cz06g32270.t1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
EOD10636 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.1 OrthoFinder
EOD30618 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.01 OrthoFinder
PTI_15G02490.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.04 OrthoFinder
Sro109_g054490.2 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.11 OrthoFinder
TP01G02670.1 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.09 OrthoFinder
Transcript_contig_89506 89506 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.03 OrthoFinder
Vocar.0001s1447.1 32885852 WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.05 OrthoFinder
XM_002500334.1 MICPUN_80233, 80233 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.08 OrthoFinder
lcl|BLLF01000177.1_cds_GFH08685.1_3162 HaLaN_03686, GFH08685 Glutamate-rich WD repeat domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59588.1_6370 PRW59588 WD40 repeat 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 71 135
IPR001680 WD40_repeat 280 314
IPR001680 WD40_repeat 370 406
IPR001680 WD40_repeat 326 358
No external refs found!