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  5. OT_05G02830.1

OT_05G02830.1


Description : U1 small nuclear ribonucleoprotein of 70kDa N-terminal; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0002840 (OrthoFinder) Phylogenetic Tree(s): OG0002840_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_05G02830.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001333.27 tig00001333_g8197.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Cre16.g656250 30778170 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 80 185
IPR000504 RRM_dom 196 264
No external refs found!