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  5. OT_05G01710.1

OT_05G01710.1


Description : MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan].


Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_05G01710.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.38 tig00000241_g20896.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.08 OrthoFinder
Cpa|evm.model.tig00020918.5 tig00020918_g15883.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.08 OrthoFinder
Cre03.g178650 30786765, MCM6 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.07 OrthoFinder
Cre10.g455850 30790894, MCM7 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.08 OrthoFinder
Cre12.g540927 30791701 Probable DNA helicase MCM9 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g28090.t1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,... 0.07 OrthoFinder
Cz10g20280.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.09 OrthoFinder
EOD16317 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.05 OrthoFinder
EOD19125 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.05 OrthoFinder
EOD20267 No alias MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan]. 0.04 OrthoFinder
EOD29724 No alias MCM OB domain; MCM, AAA-lid domain; MCM N-terminal... 0.07 OrthoFinder
PTI_06G04900.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.06 OrthoFinder
Sro1053_g235850.1 Contig4118.g31456 Zygotic DNA replication licensing factor mcm3 0.03 OrthoFinder
Sro323_g117340.1 Contig364.g4915 Maternal DNA replication licensing factor mcm6 0.02 OrthoFinder
TP05G04710.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54907 54907 MCM domain; MCM OB domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56242 56242 MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_67540 67540 MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.04 OrthoFinder
Vocar.0015s0342.1 32899062 MCM OB domain; MCM N-terminal domain; Mcm6, C-terminal... 0.05 OrthoFinder
lcl|BLLF01001170.1_cds_GFH17581.1_12058 HaLaN_14243, GFH17581 DNA replication licensing factor MCM7 0.04 OrthoFinder
lcl|BLLF01002739.1_cds_GFH25166.1_19643 HaLaN_23090, GFH25166 DNA helicase 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57124.1_9129 PRW57124 DNA replication licensing factor MCM7 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33036.1_3726 PRW33036 DNA replication licensing factor Mcm6 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499259.1_8212 KAA8499259 DNA replication licensing factor mcm6 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0009916 alternative oxidase activity IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0032954 regulation of cytokinetic process IEP Enrichment
BP GO:0032955 regulation of division septum assembly IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901891 regulation of cell septum assembly IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR041562 MCM_lid 617 699
IPR033762 MCM_OB 129 258
IPR001208 MCM_dom 322 528
No external refs found!