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  5. OT_05G00120.1

OT_05G00120.1


Description : KOW; Ribosomal protein L27e [Interproscan].


Gene families : OG_01_0004223 (OrthoFinder) Phylogenetic Tree(s): OG0004223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_05G00120.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021275.23 tig00021275_g19883.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder
Cre17.g701650 30782062, RPL27 Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder
Cz04g09100.t1 No alias Ribosomal protein L27e [Interproscan]. 0.14 OrthoFinder
Dusal.2138s00001.1 33185794 Ribosomal protein L27e; KOW [Interproscan]. 0.15 OrthoFinder
EOD36904 No alias Ribosomal protein L27e [Interproscan]. 0.21 OrthoFinder
PTI_01G09850.1 No alias Ribosomal protein L27e; KOW [Interproscan]. 0.32 OrthoFinder
Sro245_g097440.1 Contig3087.g24615 60S ribosomal protein L27 0.34 OrthoFinder
SymbC1.scaffold7526.4 7526.4 Ribosomal protein L27e [Interproscan]. 0.03 OrthoFinder
TP15G01980.1 No alias Ribosomal protein L27e [Interproscan]. 0.3 OrthoFinder
Vocar.0004s0217.1 32889937 Ribosomal protein L27e; KOW [Interproscan]. 0.04 OrthoFinder
XM_002504400.1 MICPUN_107054, 107054 Ribosomal protein L27e [Interproscan]. 0.28 OrthoFinder
XM_003059887.1 MicpuC2_34421, 34421 Ribosomal protein L27e [Interproscan]. 0.14 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05844.1_6023 PRW05844 60S ribosomal L27-3-like 0.14 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495086.1_3616 KAA8495086 60S ribosomal protein L27-B 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004619 phosphoglycerate mutase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006007 glucose catabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019320 hexose catabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046365 monosaccharide catabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005824 KOW 7 31
IPR001141 Ribosomal_L27e 52 135
No external refs found!