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  5. OT_04G05230.1

OT_04G05230.1


Description : Zinc finger, GRF-type [Interproscan].


Gene families : OG_01_0000344 (OrthoFinder) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G05230.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.113 tig00000241_g20979.t1 DNA damage response.DNA repair mechanisms.base excision... 0.02 OrthoFinder
Cre12.g534151 30792955 DNA damage response.DNA repair mechanisms.base excision... 0.04 OrthoFinder
Dusal.0676s00009.1 33185524 Hypothetical protein 0.02 OrthoFinder
Sro237_g095280.1 Contig1864.g16299 Lyase 0.01 OrthoFinder
Vocar.0015s0380.1 32899053 Endonuclease/exonuclease/phosphatase [Interproscan]. 0.03 OrthoFinder
XM_003062311.1 MicpuC2_5836, 5836 Endonuclease/exonuclease/phosphatase [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045132 meiotic chromosome segregation IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
BP GO:0098813 nuclear chromosome segregation IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
BP GO:1903046 meiotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR010666 Znf_GRF 366 416
No external refs found!