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  5. OT_04G04950.1

OT_04G04950.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G04950.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.06 OrthoFinder
Cre10.g466450 30789814 No description available 0.11 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.09 OrthoFinder
Dusal.0556s00003.1 33195343 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
EOD39665 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_22G00530.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Sro2184_g318070.1 Contig1506.g13757 Splicing factor 3B subunit 4 0.02 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.07 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.09 OrthoFinder
Transcript_contig_57231 57231 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0408.1 32891271 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
XM_003060411.1 MicpuC2_60299, 60299 RNA recognition motif domain [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01004145.1_cds_GFH29022.1_23499 HaLaN_27610, GFH29022 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 196 267
IPR000504 RRM_dom 83 149
No external refs found!