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  5. OT_04G02790.1

OT_04G02790.1


Description : Helicase, C-terminal; GUCT; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G02790.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.151 tig00000093_g3579.t1 DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.02 OrthoFinder
Cpa|evm.model.tig00020734.25 tig00020734_g13581.t1 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.04 OrthoFinder
Cre02.g118300 30784864 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.04 OrthoFinder
Cz13g08080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.16 OrthoFinder
Cz13g08090.t1 No alias Helicase, C-terminal; GUCT [Interproscan]. 0.14 OrthoFinder
Dusal.0202s00008.1 33191697 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.04 OrthoFinder
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.08 OrthoFinder
TP04G04540.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Transcript_contig_56946 56946 Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.01 OrthoFinder
Vocar.0033s0039.1 32886419 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.07 OrthoFinder
XM_002502463.1 MICPUN_58575, 58575 DEAD/DEAH box RNA helicase 0.02 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.21 OrthoFinder
XM_003056881.1 MicpuC2_56534, 56534 DEAD/DEAH box RNA helicase 0.02 OrthoFinder
XM_003058030.1 MicpuC2_39273, 39273 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.15 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.09 OrthoFinder
lcl|BLLF01001583.1_cds_GFH20145.1_14622 HaLaN_17222, GFH20145 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.06 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.09 OrthoFinder
lcl|BLLF01004392.1_cds_GFH29513.1_23990 HaLaN_28189, GFH29513 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.16 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492593.1_9286 KAA8492593 Nucleolar RNA helicase 2 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 323 430
IPR012562 GUCT 526 624
IPR011545 DEAD/DEAH_box_helicase_dom 106 280
No external refs found!