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  5. OT_04G02210.1

OT_04G02210.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0003870 (OrthoFinder) Phylogenetic Tree(s): OG0003870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G02210.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cre16.g665400 30776948 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
Cz03g18050.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Dusal.0142s00008.1 33187911 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
EOD19599 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
PTI_15G02840.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Vocar.0090s0009.1 32884095 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
XM_003057991.1 MicpuC2_57102, 57102 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0007275 multicellular organism development IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
BP GO:0009555 pollen development IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032501 multicellular organismal process IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0048229 gametophyte development IEP Enrichment
BP GO:0048856 anatomical structure development IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!