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  5. OT_04G00100.1

OT_04G00100.1


Description : S1 domain; Translation elongation factor EFTs/EF1B, dimerisation [Interproscan].


Gene families : OG_01_0000919 (OrthoFinder) Phylogenetic Tree(s): OG0000919_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_04G00100.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000310.59 tig00000310_g23984.t1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder
Cpa|evm.model.tig00021319.56 tig00021319_g20249.t1 Protein biosynthesis.organelle translation... 0.07 OrthoFinder
Cre10.g435500 30790031, EFT2 Protein biosynthesis.organelle translation... 0.02 OrthoFinder
Cre12.g519180 30791737 Protein biosynthesis.organelle translation... 0.18 OrthoFinder
Cz02g30200.t1 No alias S1 domain [Interproscan]. 0.14 OrthoFinder
Cz02g30210.t1 No alias Translation elongation factor EFTs/EF1B, dimerisation... 0.11 OrthoFinder
Cz06g36160.t1 No alias Translation elongation factor EFTs/EF1B, dimerisation... 0.03 OrthoFinder
Dusal.0078s00020.1 33203819 S1 domain; Translation elongation factor EFTs/EF1B,... 0.03 OrthoFinder
Dusal.0306s00022.1 33202758 Translation elongation factor EFTs/EF1B, dimerisation... 0.02 OrthoFinder
EOD07828 No alias Putative mitochondrial translation elongation factor... 0.02 OrthoFinder
EOD40006 No alias Putative mitochondrial translation elongation factor... 0.02 OrthoFinder
PTI_01G04020.1 No alias Translation elongation factor EFTs/EF1B, dimerisation... 0.03 OrthoFinder
Sro135_g063790.1 Contig2231.g18524 Factor Ts 0.05 OrthoFinder
Sro492_g153730.1 Contig2481.g20299 Factor Ts 0.06 OrthoFinder
TP02G08520.1 No alias Translation elongation factor EFTs/EF1B, dimerisation... 0.04 OrthoFinder
Transcript_contig_2419 2419 Translation elongation factor EFTs/EF1B, dimerisation... 0.02 OrthoFinder
Vocar.0006s0257.1 32894156 Translation elongation factor EFTs/EF1B, dimerisation;... 0.07 OrthoFinder
XM_002499787.1 MICPUN_55643, 55643 S1 domain; Translation elongation factor EFTs/EF1B,... 0.05 OrthoFinder
XM_003062028.1 MicpuC2_51502, 51502 S1 domain; Translation elongation factor EFTs/EF1B,... 0.11 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58941.1_7328 PRW58941 Elongation factor Ts 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003746 translation elongation factor activity IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR014039 Transl_elong_EFTs/EF1B_dimer 385 528
IPR014039 Transl_elong_EFTs/EF1B_dimer 624 767
IPR003029 S1_domain 180 244
IPR003029 S1_domain 72 139
No external refs found!