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Description : Vacuolar protein sorting-associated protein 13, SHR-binding domain; Vacuolar protein sorting-associated protein 13, N-terminal domain; Vacuolar protein sorting-associated protein 13, second N-terminal domain [Interproscan].
Gene families : OG_01_0000454 (OrthoFinder) Phylogenetic Tree(s): OG0000454_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: OT_03G05620.1 | |
| Cluster | HCCA: Cluster_5 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000459.51 | tig00000459_g1113.t1 | No description available | 0.03 | OrthoFinder | |
| Cpa|evm.model.tig00020710.86 | tig00020710_g13343.t1 | No description available | 0.02 | OrthoFinder | |
| Cpa|evm.model.tig00020904.70 | tig00020904_g15203.t1 | No description available | 0.02 | OrthoFinder | |
| Cpa|evm.model.tig00021428.20 | tig00021428_g21163.t1 | No description available | 0.01 | OrthoFinder | |
| Cre12.g483500 | 30792128 | No description available | 0.02 | OrthoFinder | |
| Cz02g19210.t1 | No alias | VPS13, repeated coiled region; Vacuolar protein... | 0.04 | OrthoFinder | |
| Cz14g16120.t1 | No alias | Vacuolar protein sorting-associated protein 13,... | 0.02 | OrthoFinder | |
| Transcript_contig_53733 | 53733 | Vacuolar protein sorting-associated protein 13,... | 0.02 | OrthoFinder | |
| XM_002506972.1 | MICPUN_54783, 54783 | Vacuolar protein sorting-associated protein 13, second... | 0.03 | OrthoFinder | |
| XM_002507017.1 | MICPUN_54877, 54877 | Vacuolar protein sorting-associated protein 13, second... | 0.02 | OrthoFinder | |
| lcl|BLLF01000617.1_cds_GFH13477.1_7954 | HaLaN_09370, GFH13477 | Vacuolar protein sorting-associated protein 13,... | 0.01 | OrthoFinder | |
| lcl|BLLF01000617.1_cds_GFH13478.1_7955 | HaLaN_09371, GFH13478 | Hypothetical protein | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
| CC | GO:0000796 | condensin complex | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003857 | 3-hydroxyacyl-CoA dehydrogenase activity | IEP | Enrichment |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | Enrichment |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0005216 | ion channel activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| CC | GO:0005777 | peroxisome | IEP | Enrichment |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Enrichment |
| BP | GO:0005991 | trehalose metabolic process | IEP | Enrichment |
| BP | GO:0005992 | trehalose biosynthetic process | IEP | Enrichment |
| BP | GO:0006323 | DNA packaging | IEP | Enrichment |
| BP | GO:0006811 | ion transport | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0007031 | peroxisome organization | IEP | Enrichment |
| BP | GO:0007076 | mitotic chromosome condensation | IEP | Enrichment |
| MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
| MF | GO:0008236 | serine-type peptidase activity | IEP | Enrichment |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Enrichment |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015267 | channel activity | IEP | Enrichment |
| MF | GO:0015276 | ligand-gated ion channel activity | IEP | Enrichment |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| MF | GO:0017025 | TBP-class protein binding | IEP | Enrichment |
| MF | GO:0017171 | serine hydrolase activity | IEP | Enrichment |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0022834 | ligand-gated channel activity | IEP | Enrichment |
| BP | GO:0030261 | chromosome condensation | IEP | Enrichment |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
| MF | GO:0030515 | snoRNA binding | IEP | Enrichment |
| BP | GO:0036260 | RNA capping | IEP | Enrichment |
| CC | GO:0042579 | microbody | IEP | Enrichment |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Enrichment |
| BP | GO:1903047 | mitotic cell cycle process | IEP | Enrichment |
| No external refs found! |