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Description : Radical SAM [Interproscan].
Gene families : OG_01_0000198 (OrthoFinder) Phylogenetic Tree(s): OG0000198_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: OT_03G05110.1 | |
| Cluster | HCCA: Cluster_49 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000113.127 | tig00000113_g5708.t1 | No description available | 0.02 | OrthoFinder | |
| Cre01.g028450 | 30788447 | No description available | 0.09 | OrthoFinder | |
| Cre02.g086550 | 30785530 | No description available | 0.02 | OrthoFinder | |
| EOD08406 | No alias | Radical SAM [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_08G00750.1 | No alias | Radical SAM [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0017s0135.1 | 32891532 | Hypothetical protein | 0.02 | OrthoFinder | |
| XM_002504959.1 | MICPUN_86756, 86756 | Radical SAM [Interproscan]. | 0.07 | OrthoFinder | |
| XM_003054875.1 | MicpuC2_10773, 10773 | Hypothetical protein | 0.04 | OrthoFinder | |
| lcl|LHPG02000017.1_cds_PRW33242.1_3456 | PRW33242 | Ribosomal RNA large subunit methyltransferase N isoform A | 0.02 | OrthoFinder | |
| lcl|LHPG02000025.1_cds_PRW20249.1_5687 | PRW20249 | Radical SAM domain-containing | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496335.1_64 | KAA8496335 | Dual-specificity RNA methyltransferase RlmN | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEA | Interproscan |
| MF | GO:0051536 | iron-sulfur cluster binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Enrichment |
| MF | GO:0008703 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | IEP | Enrichment |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Enrichment |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| MF | GO:0035596 | methylthiotransferase activity | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | Enrichment |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007197 | rSAM | 76 | 235 |
| No external refs found! |