OT_03G04780.1


Description : Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G04780.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000786.1 tig00000786_g4048.t1 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cpa|evm.model.tig00021094.26 tig00021094_g18111.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre12.g492450 30792289 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz05g07080.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
Cz19g09190.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD09087 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD09487 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
EOD25315 No alias Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
EOD26801 No alias Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
Sro152_g069390.1 Contig69.g699 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
TP05G00340.1 No alias Domain of unknown function DUF1605; Helicase,... 0.06 OrthoFinder
Vocar.0002s0213.1 32890657 Domain of unknown function DUF1605; DEAD/DEAH box... 0.02 OrthoFinder
XM_002500677.1 MICPUN_65643, 65643 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_002503731.1 MICPUN_59722, 59722 Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
XM_002506086.1 MICPUN_88188, 88188 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_003064367.1 MicpuC2_43509, 43509 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498481.1_7434 KAA8498481 DExH-box ATP-dependent RNA helicase DExH1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 960 1047
IPR011709 DUF1605 1141 1230
IPR001650 Helicase_C 764 894
IPR011545 DEAD/DEAH_box_helicase_dom 498 653
No external refs found!