Description : Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].
Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: OT_03G04780.1 | |
Cluster | HCCA: Cluster_6 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000786.1 | tig00000786_g4048.t1 | DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana | 0.05 | OrthoFinder | |
Cpa|evm.model.tig00021094.26 | tig00021094_g18111.t1 | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
Cre12.g492450 | 30792289 | DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cz05g07080.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
Cz19g09190.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
EOD09087 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.01 | OrthoFinder | |
EOD09487 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.04 | OrthoFinder | |
EOD25315 | No alias | Helicase, C-terminal; Helicase-associated domain;... | 0.02 | OrthoFinder | |
EOD26801 | No alias | Helicase, C-terminal; Helicase-associated domain [Interproscan]. | 0.01 | OrthoFinder | |
Sro152_g069390.1 | Contig69.g699 | Splicing factor ATP-dependent RNA helicase | 0.02 | OrthoFinder | |
TP05G00340.1 | No alias | Domain of unknown function DUF1605; Helicase,... | 0.06 | OrthoFinder | |
Vocar.0002s0213.1 | 32890657 | Domain of unknown function DUF1605; DEAD/DEAH box... | 0.02 | OrthoFinder | |
XM_002500677.1 | MICPUN_65643, 65643 | Helicase, C-terminal; Helicase-associated domain;... | 0.03 | OrthoFinder | |
XM_002503731.1 | MICPUN_59722, 59722 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.04 | OrthoFinder | |
XM_002506086.1 | MICPUN_88188, 88188 | Helicase, C-terminal; Helicase-associated domain;... | 0.03 | OrthoFinder | |
XM_003064367.1 | MicpuC2_43509, 43509 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8498481.1_7434 | KAA8498481 | DExH-box ATP-dependent RNA helicase DExH1 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Enrichment |
BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006397 | mRNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
MF | GO:0016597 | amino acid binding | IEP | Enrichment |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0017069 | snRNA binding | IEP | Enrichment |
MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
MF | GO:0019842 | vitamin binding | IEP | Enrichment |
CC | GO:0019867 | outer membrane | IEP | Enrichment |
MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Enrichment |
MF | GO:0031369 | translation initiation factor binding | IEP | Enrichment |
MF | GO:0032977 | membrane insertase activity | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
MF | GO:0043177 | organic acid binding | IEP | Enrichment |
BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
MF | GO:0140597 | protein carrier activity | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
No external refs found! |