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  5. OT_03G04710.1

OT_03G04710.1


Description : Zinc finger, C3HC4 RING-type; E3 ligase, CCCH-type zinc finger [Interproscan].


Gene families : OG_01_0002730 (OrthoFinder) Phylogenetic Tree(s): OG0002730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G04710.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55952 55952 Zinc finger, CCCH-type; E3 ligase, CCCH-type zinc finger... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 5 25
IPR041367 Znf-CCCH_4 45 65
IPR018957 Znf_C3HC4_RING-type 236 297
No external refs found!