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  5. OT_03G02560.1

OT_03G02560.1


Description : Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2 [Interproscan].


Gene families : OG_01_0000474 (OrthoFinder) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G02560.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.20 tig00021721_g23220.t1 RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder
Cre03.g175000 30787917 RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder
Cre10.g440900 30789863, RRP43 No description available 0.03 OrthoFinder
Sro440_g143420.1 Contig2528.g20654 Complex component RRP43 0.04 OrthoFinder
Vocar.0011s0230.1 32895321 Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
XM_003061530.1 MicpuC2_20175, 20175 Exoribonuclease, phosphorolytic domain 1;... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 206 268
IPR001247 ExoRNase_PH_dom1 34 169
No external refs found!