OT_03G01700.1


Description : Helicase, C-terminal; RQC domain; ATP-dependent DNA helicase RecQ, zinc-binding domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G01700.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.41 tig00000789_g4134.t1 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00020961.28 tig00020961_g16648.t1 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g178950 30787878 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre04.g219750 30791451 Cell cycle.mitosis and meiosis.meiotic... 0.06 OrthoFinder
Cre12.g490150 30793094 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz01g16070.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Cz01g28020.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.04 OrthoFinder
Cz02g03170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.06 OrthoFinder
Cz02g33110.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Cz03g24160.t1 No alias Helicase, C-terminal; Transcription factor IIS,... 0.02 OrthoFinder
Cz10g20100.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.02 OrthoFinder
Cz12g21050.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Dusal.0020s00028.1 33193689 Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.04 OrthoFinder
Dusal.0209s00011.1 33199677 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
Dusal.0407s00008.1 33197886 Zinc finger, CCHC-type; Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
EOD08625 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD12459 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
EOD15463 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
EOD36303 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
PTI_01G08380.1 No alias Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
PTI_13G02100.1 No alias Zinc finger, GRF-type; Helicase, C-terminal; DEAD/DEAH... 0.04 OrthoFinder
PTI_16G00860.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Sro108_g054090.1 Contig2294.g18989 Syndrome ATP-dependent helicase homolog 0.05 OrthoFinder
Sro2203_g318940.1 Contig3463.g26860 Bloom syndrome protein homolog 0.05 OrthoFinder
Sro408_g136820.1 Contig3193.g25217 Probable Werner syndrome ATP-dependent helicase homolog 1 0.07 OrthoFinder
Sro83_g044440.1 Contig4450.g33418 Syndrome ATP-dependent helicase homolog 0.04 OrthoFinder
Sro9_g007280.1 Contig4120.g31496 Probable Werner syndrome ATP-dependent helicase homolog 1 0.06 OrthoFinder
TP03G09760.1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.02 OrthoFinder
Vocar.0018s0223.1 32898468 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.03 OrthoFinder
Vocar.0048s0026.1 32893654 Zinc finger, CCHC-type; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
XM_002499883.1 MICPUN_79105, 79105 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.04 OrthoFinder
XM_002502093.1 MICPUN_69395, 69395 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.03 OrthoFinder
XM_002502498.1 MICPUN_50295, 50295 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_003055181.1 MicpuC2_12297, 12297 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
XM_003056852.1 MicpuC2_636, 636 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
XM_003062439.1 MicpuC2_29315, 29315 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.04 OrthoFinder
XM_003062797.1 MicpuC2_52663, 52663 ATP-dependent DNA helicase 0.05 OrthoFinder
lcl|BLLF01003204.1_cds_GFH26680.1_21157 HaLaN_24867, GFH26680 ATP-dependent DNA helicase 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493192.1_9493 KAA8493192 ATP-dependent DNA helicase RecQ 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0043138 3'-5' DNA helicase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR018982 RQC_domain 812 930
IPR011545 DEAD/DEAH_box_helicase_dom 395 560
IPR001650 Helicase_C 612 722
IPR032284 RecQ_Zn-bd 735 804
No external refs found!