OT_03G01700.1

Description : Helicase, C-terminal; RQC domain; ATP-dependent DNA helicase RecQ, zinc-binding domain; DEAD/DEAH box helicase domain [Interproscan].

Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: OT_03G01700.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000789.41	tig00000789_g4134.t1	ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cpa\|evm.model.tig00020961.28	tig00020961_g16648.t1	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre03.g178950	30787878	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cre04.g219750	30791451	Cell cycle.mitosis and meiosis.meiotic...	0.06	OrthoFinder
Cre12.g490150	30793094	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.05	OrthoFinder
Cz01g16070.t1	No alias	DEAD/DEAH box helicase domain [Interproscan].	0.02	OrthoFinder
Cz01g28020.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.04	OrthoFinder
Cz02g03170.t1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain;...	0.06	OrthoFinder
Cz02g33110.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.03	OrthoFinder
Cz03g24160.t1	No alias	Helicase, C-terminal; Transcription factor IIS,...	0.02	OrthoFinder
Cz10g20100.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.02	OrthoFinder
Cz12g21050.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.03	OrthoFinder
Dusal.0020s00028.1	33193689	Helicase, C-terminal; RQC domain; ATP-dependent DNA...	0.04	OrthoFinder
Dusal.0209s00011.1	33199677	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
Dusal.0407s00008.1	33197886	Zinc finger, CCHC-type; Helicase, C-terminal [Interproscan].	0.01	OrthoFinder
EOD08625	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
EOD12459	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.06	OrthoFinder
EOD15463	No alias	DEAD/DEAH box helicase domain [Interproscan].	0.02	OrthoFinder
EOD36303	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.04	OrthoFinder
PTI_01G08380.1	No alias	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
PTI_13G02100.1	No alias	Zinc finger, GRF-type; Helicase, C-terminal; DEAD/DEAH...	0.04	OrthoFinder
PTI_16G00860.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.05	OrthoFinder
Sro108_g054090.1	Contig2294.g18989	Syndrome ATP-dependent helicase homolog	0.05	OrthoFinder
Sro2203_g318940.1	Contig3463.g26860	Bloom syndrome protein homolog	0.05	OrthoFinder
Sro408_g136820.1	Contig3193.g25217	Probable Werner syndrome ATP-dependent helicase homolog 1	0.07	OrthoFinder
Sro83_g044440.1	Contig4450.g33418	Syndrome ATP-dependent helicase homolog	0.04	OrthoFinder
Sro9_g007280.1	Contig4120.g31496	Probable Werner syndrome ATP-dependent helicase homolog 1	0.06	OrthoFinder
TP03G09760.1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.02	OrthoFinder
Vocar.0018s0223.1	32898468	DEAD/DEAH box helicase domain; Helicase, C-terminal...	0.03	OrthoFinder
Vocar.0048s0026.1	32893654	Zinc finger, CCHC-type; DEAD/DEAH box helicase domain...	0.06	OrthoFinder
XM_002499883.1	MICPUN_79105, 79105	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.04	OrthoFinder
XM_002502093.1	MICPUN_69395, 69395	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.03	OrthoFinder
XM_002502498.1	MICPUN_50295, 50295	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.08	OrthoFinder
XM_003055181.1	MicpuC2_12297, 12297	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
XM_003056852.1	MicpuC2_636, 636	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.06	OrthoFinder
XM_003062439.1	MicpuC2_29315, 29315	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.04	OrthoFinder
XM_003062797.1	MicpuC2_52663, 52663	ATP-dependent DNA helicase	0.05	OrthoFinder
lcl\|BLLF01003204.1_cds_GFH26680.1_21157	HaLaN_24867, GFH26680	ATP-dependent DNA helicase	0.01	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493192.1_9493	KAA8493192	ATP-dependent DNA helicase RecQ	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0004146	dihydrofolate reductase activity	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
BP	GO:0016197	endosomal transport	IEP	Enrichment
CC	GO:0016459	myosin complex	IEP	Enrichment
BP	GO:0016482	cytosolic transport	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Enrichment
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
CC	GO:0030118	clathrin coat	IEP	Enrichment
CC	GO:0030120	vesicle coat	IEP	Enrichment
CC	GO:0030125	clathrin vesicle coat	IEP	Enrichment
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Enrichment
CC	GO:0030132	clathrin coat of coated pit	IEP	Enrichment
CC	GO:0030906	retromer, cargo-selective complex	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Enrichment
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043248	proteasome assembly	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Enrichment
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
MF	GO:0060090	molecular adaptor activity	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
CC	GO:0098797	plasma membrane protein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR018982	RQC_domain	812	930
IPR011545	DEAD/DEAH_box_helicase_dom	395	560
IPR001650	Helicase_C	612	722
IPR032284	RecQ_Zn-bd	735	804

External Links

No external refs found!

OT_03G01700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation