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  5. OT_03G01110.1

OT_03G01110.1


Description : High mobility group box domain; Zinc finger, PHD-finger; PHD-zinc-finger like domain; SAND domain; SET domain; Zinc finger, CW-type; PHD-finger; PWWP domain [Interproscan].


Gene families : OG_01_0000051 (OrthoFinder) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G01110.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000488.8 tig00000488_g1344.t1 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder
Cz02g16090.t1 No alias SET domain [Interproscan]. 0.03 OrthoFinder
Sro84_g045070.1 Contig220.g2640 36 and H4 lysine-20 specific 0.03 OrthoFinder
Transcript_contig_54729 54729 SET domain; Pre-SET CXC domain [Interproscan]. 0.03 OrthoFinder
XM_002502643.1 MICPUN_58938, 58938 Set domain protein 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57331.1_9054 PRW57331 Microtubule-associated futsch isoform X1 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493195.1_9496 KAA8493195 Putative histone-lysine N-methyltransferase Mes-4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000770 SAND_dom 1032 1117
IPR000770 SAND_dom 482 539
IPR009071 HMG_box_dom 352 417
IPR001214 SET_dom 1613 1717
IPR019787 Znf_PHD-finger 212 269
IPR000313 PWWP_dom 18 118
IPR011124 Znf_CW 1299 1347
No external refs found!