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  5. OT_03G00940.1

OT_03G00940.1


Description : Serine hydroxymethyltransferase-like domain [Interproscan].


Gene families : OG_01_0000330 (OrthoFinder) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_03G00940.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
PTI_03G04180.1 No alias Serine hydroxymethyltransferase-like domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold380.5 380.5 Methylenetetrahydrofolate reductase; Serine... 0.02 OrthoFinder
SymbC1.scaffold5445.4 5445.4 Serine hydroxymethyltransferase-like domain [Interproscan]. 0.02 OrthoFinder
XM_002501295.1 MICPUN_104794, 104794 Serine hydroxymethyltransferase (SHMT) 0.04 OrthoFinder
lcl|BLLF01001253.1_cds_GFH18143.1_12620 HaLaN_14894, GFH18143 Serine hydroxymethyltransferase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004506 squalene monooxygenase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097020 COPII receptor activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 12 406
No external refs found!