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  5. OT_02G04320.1

OT_02G04320.1


Description : Ribosomal protein L3 [Interproscan].


Gene families : OG_01_0000938 (OrthoFinder) Phylogenetic Tree(s): OG0000938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_02G04320.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre01.g022250 30789331, MRPL3 Protein biosynthesis.organelle translation... 0.07 OrthoFinder
Cre48.g761197 30778371 Protein biosynthesis.organelle translation... 0.27 OrthoFinder
Cz04g11050.t1 No alias Hypothetical protein 0.17 OrthoFinder
Cz04g11060.t1 No alias Ribosomal protein L3 [Interproscan]. 0.18 OrthoFinder
Dusal.0108s00003.1 33189525 Ribosomal protein L3 [Interproscan]. 0.04 OrthoFinder
Sro261_g101740.1 Contig3068.g24446 Protein L3 0.04 OrthoFinder
Sro51_chlor_g029470.1 Rpl3 Rpl3 0.11 OrthoFinder
TPCG02330.1 No alias Ribosomal protein L3 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_56715 56715 Ribosomal protein L3 [Interproscan]. 0.04 OrthoFinder
Vocar.0006s0138.1 32894042 Ribosomal protein L3 [Interproscan]. 0.05 OrthoFinder
XM_002504954.1 MICPUN_62670, 62670 Ribosomal protein L3, chloroplast precursor (RPL3) 0.24 OrthoFinder
XM_003060563.1 MicpuC2_44548, 44548 Ribosomal protein L3 [Interproscan]. 0.1 OrthoFinder
XM_003062879.1 MicpuC2_6446, 6446 Ribosomal protein L3 [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01000260.1_cds_GFH09758.1_4235 HaLaN_04960, GFH09758 Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001775.1_cds_GFH21186.1_15663 HaLaN_18435, GFH21186 Ribosomal protein L3 [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01002609.1_cds_GFH24701.1_19178 HaLaN_22548, GFH24701 Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57537.1_8896 PRW57537 50S ribosomal L3-chloroplastic 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494995.1_3525 KAA8494995 50S ribosomal protein L3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 131 216
No external refs found!