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  5. OT_02G03410.1

OT_02G03410.1


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000803 (OrthoFinder) Phylogenetic Tree(s): OG0000803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_02G03410.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.21 tig00000441_g715.t1 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00001292.5 tig00001292_g8040.t1 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g28110.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Sro502_g155540.1 Contig2629.g21320 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
TP01G04150.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002502368.1 MICPUN_58392, 58392 SNF2 super family 0.02 OrthoFinder
XM_003057635.1 MicpuC2_15861, 15861 SNF2 super family 0.01 OrthoFinder
lcl|VRMN01000036.1_cds_KAA8490288.1_5958 KAA8490288 Protein CHROMATIN REMODELING 8 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 347 637
IPR001650 Helicase_C 662 770
No external refs found!