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  5. OT_02G02480.1

OT_02G02480.1


Description : Ribonuclease H domain; Exonuclease, RNase T/DNA polymerase III [Interproscan].


Gene families : OG_01_0000873 (OrthoFinder) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_02G02480.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001310.11 tig00001310_g8161.t1 No description available 0.05 OrthoFinder
Cre11.g480060 30775535 No description available 0.05 OrthoFinder
Cz01g02030.t1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.03 OrthoFinder
EOD35209 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
PTI_11G02920.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.11 OrthoFinder
Sro246_g097710.1 Contig171.g1955 Interferon-stimulated 20 kDa exonuclease-like 2 0.12 OrthoFinder
TP22G01600.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.08 OrthoFinder
Transcript_contig_53924 53924 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.02 OrthoFinder
Vocar.0048s0021.1 32893643 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.04 OrthoFinder
XM_003062382.1 MicpuC2_5594, 5594 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59412.1_7034 PRW59412 RNA exonuclease 4 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 298 450
IPR002156 RNaseH_domain 72 201
No external refs found!