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  5. OT_02G01220.1

OT_02G01220.1


Description : Clp protease proteolytic subunit /Translocation-enhancing protein TepA [Interproscan].


Gene families : OG_01_0000040 (OrthoFinder) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_02G01220.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001420.2 tig00001420_g8689.t1 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder
Cpa|evm.model.tig00020952.49 tig00020952_g16507.t1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cpa|evm.model.tig00021522.2 tig00021522_g22096.t1 ATP-dependent Clp protease proteolytic subunit 5,... 0.02 OrthoFinder
Cre03.g204350 30787499, CLPR4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre07.g331500 30774567, CLPR3 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre12.g486100 30791972, CLPP5 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cre12.g500950 30792003, CLPP4 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder
Cre14.g619100 30776241, CLPR1 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder
Cz01g02300.t1 No alias Clp protease proteolytic subunit... 0.02 OrthoFinder
Cz12g19140.t1 No alias Clp protease proteolytic subunit... 0.02 OrthoFinder
EOD08646 No alias Putative endopeptidase Clp [Ensembl]. 0.02 OrthoFinder
EOD13717 No alias Putative endopeptidase Clp [Ensembl]. 0.02 OrthoFinder
EOD29710 No alias Putative endopeptidase Clp [Ensembl]. 0.03 OrthoFinder
EOD36731 No alias Putative endopeptidase Clp [Ensembl]. 0.02 OrthoFinder
EOD40305 No alias Putative endopeptidase Clp [Ensembl]. 0.02 OrthoFinder
Transcript_contig_54874 54874 Clp protease proteolytic subunit... 0.01 OrthoFinder
Transcript_contig_56182 56182 Clp protease proteolytic subunit... 0.03 OrthoFinder
Transcript_contig_56908 56908 Clp protease proteolytic subunit... 0.02 OrthoFinder
XM_003056341.1 MicpuC2_55345, 55345 ATP-dependent clp protease (CLP) 0.03 OrthoFinder
XM_003056496.1 MicpuC2_55668, 55668 Endopeptidase clp chloroplast precursor 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 91 272
No external refs found!