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  5. OT_01G06040.1

OT_01G06040.1


Description : Ribosomal protein L17 [Interproscan].


Gene families : OG_01_0000944 (OrthoFinder) Phylogenetic Tree(s): OG0000944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_01G06040.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000889.52 tig00000889_g5342.t1 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cre02.g108850 30784955, PRPL17 Protein biosynthesis.organelle translation... 0.24 OrthoFinder
Cz01g45010.t1 No alias Ribosomal protein L17 [Interproscan]. 0.03 OrthoFinder
Dusal.0321s00007.1 33203143 Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
EOD15659 No alias Ribosomal protein L17 [Interproscan]. 0.05 OrthoFinder
EOD37010 No alias Ribosomal protein L17 [Interproscan]. 0.04 OrthoFinder
PTI_01G03920.1 No alias Ribosomal protein L17 [Interproscan]. 0.09 OrthoFinder
Sro1192_g251070.1 Contig331.g4403 Protein L17 0.07 OrthoFinder
SymbC1.scaffold1290.1 1290.1 Ribosomal protein L17 [Interproscan]. 0.03 OrthoFinder
TP13G00420.1 No alias Ribosomal protein L17 [Interproscan]. 0.04 OrthoFinder
Transcript_contig_53809 53809 Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0070.1 32897191 Ribosomal protein L17 [Interproscan]. 0.06 OrthoFinder
XM_003062771.1 MicpuC2_29418, 29418 Ribosomal protein L17 [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01002996.1_cds_GFH26033.1_20510 HaLaN_24106, GFH26033 Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39147.1_2649 PRW39147 50S ribosomal chloroplastic-like 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498883.1_7836 KAA8498883 50S ribosomal protein L17, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 61 157
No external refs found!