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  5. OT_01G05290.1

OT_01G05290.1


Description : NLE; WD40 repeat [Interproscan].


Gene families : OG_01_0003560 (OrthoFinder) Phylogenetic Tree(s): OG0003560_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_01G05290.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre17.g710100 30782724 Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder
Cz05g29110.t1 No alias WD40 repeat; NLE [Interproscan]. 0.08 OrthoFinder
Dusal.0179s00021.1 33190114 WD40 repeat; NLE [Interproscan]. 0.05 OrthoFinder
EOD41420 No alias WD40 repeat; NLE [Interproscan]. 0.02 OrthoFinder
PTI_02G04040.1 No alias WD40 repeat; NLE [Interproscan]. 0.1 OrthoFinder
Sro2353_g324440.1 Contig3833.g29477 Ribosome biogenesis protein WDR12 0.07 OrthoFinder
TP06G01220.1 No alias WD40 repeat; NLE [Interproscan]. 0.07 OrthoFinder
Transcript_contig_62001 62001 NLE [Interproscan]. 0.02 OrthoFinder
XM_003063037.1 MicpuC2_21888, 21888 NLE; WD40 repeat [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33193.1_3572 PRW33193 Ribosome biogenesis WDR12-like protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR012972 NLE 10 71
IPR001680 WD40_repeat 190 224
IPR001680 WD40_repeat 391 426
IPR001680 WD40_repeat 313 340
IPR001680 WD40_repeat 267 299
IPR001680 WD40_repeat 351 385
No external refs found!