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  5. OT_01G03500.1

OT_01G03500.1


Description : G-patch domain [Interproscan].


Gene families : OG_01_0002250 (OrthoFinder) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_01G03500.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre07.g347400 30774277 Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder
Cz02g35040.t1 No alias G-patch domain [Interproscan]. 0.07 OrthoFinder
Dusal.0185s00003.1 33185832 G-patch domain [Interproscan]. 0.04 OrthoFinder
PTI_04G04430.1 No alias G-patch domain [Interproscan]. 0.05 OrthoFinder
Sro650_g181440.1 Contig647.g7760 PIN2/TERF1-interacting telomerase inhibitor 1 0.15 OrthoFinder
TP01G00520.1 No alias G-patch domain [Interproscan]. 0.06 OrthoFinder
TP03G08160.1 No alias G-patch domain [Interproscan]. 0.06 OrthoFinder
Transcript_contig_54158 54158 G-patch domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000174.1_cds_GFH08637.1_3114 HaLaN_03626, GFH08637 G-patch domain-containing protein 0.06 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60174.1_6320 PRW60174 D111 G-patch domain-containing family 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497644.1_6597 KAA8497644 PIN2/TERF1-interacting telomerase inhibitor 1 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499929.1_8882 KAA8499929 G-patch domain [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000467 G_patch_dom 28 70
No external refs found!