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  5. XM_003063730.1

XM_003063730.1 (MicpuC2_49744, 49744)


Aliases : MicpuC2_49744, 49744

Description : Ribosomal protein S13/S15, N-terminal; Ribosomal protein S15 [Interproscan].


Gene families : OG_01_0003390 (OrthoFinder) Phylogenetic Tree(s): OG0003390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003063730.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.15 tig00000489_g1374.t1 40S ribosomal protein S13 OS=Glycine max 0.02 OrthoFinder
Cre07.g331900 30774339, RPS13 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz07g16040.t1 No alias Ribosomal protein S15 [Interproscan]. 0.1 OrthoFinder
Dusal.0017s00026.1 33200512 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.12 OrthoFinder
EOD30715 No alias Ribosomal protein S15; Ribosomal protein S13/S15,... 0.03 OrthoFinder
EOD34926 No alias 40S ribosomal protein S13 [Ensembl]. 0.03 OrthoFinder
OT_01G03170.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.17 OrthoFinder
PTI_01G02690.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.15 OrthoFinder
Sro611_g175300.1 Contig1882.g16411 40S ribosomal protein S13 0.18 OrthoFinder
SymbC1.scaffold2720.1 2720.1 Glycosyltransferase, DXD sugar-binding motif; Ribosomal... 0.03 OrthoFinder
TP04G08460.1 No alias Ribosomal protein S15; Ribosomal protein S13/S15,... 0.08 OrthoFinder
XM_002504263.1 MICPUN_108906, 108906 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.17 OrthoFinder
lcl|BLLF01005706.1_cds_GFH31540.1_26017 HaLaN_30603, GFH31540 Ribosomal_S13_N domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56017.1_9996 PRW56017 40S ribosomal S13 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495591.1_1589 KAA8495591 40S ribosomal protein S13 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 83 146
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!