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  5. XM_003063066.1

XM_003063066.1 (MicpuC2_36187, 36187)


Aliases : MicpuC2_36187, 36187

Description : RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003063066.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre02.g078750 30785017, PUS3 RNA processing.RNA... 0.02 OrthoFinder
OT_08G02780.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.04 OrthoFinder
PTI_20G00270.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro218_g090150.1 Contig1136.g10916 Ribosomal large subunit pseudouridine synthase 0.01 OrthoFinder
Transcript_contig_57923 57923 RNA-binding S4 domain [Interproscan]. 0.01 OrthoFinder
Vocar.0005s0224.1 32883863 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_002508549.1 MICPUN_62148, 62148 RRNA/tRNA pseudouridine synthase 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 166 332
IPR002942 S4_RNA-bd 102 139
No external refs found!