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  5. XM_003062105.1

XM_003062105.1 (MicpuC2_48404, 48404)


Aliases : MicpuC2_48404, 48404

Description : Transcription elongation-nucleosome displacement protein Spt5


Gene families : OG_01_0002170 (OrthoFinder) Phylogenetic Tree(s): OG0002170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003062105.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001094.2 tig00001094_g6974.t1 Putative transcription elongation factor SPT5 homolog 1... 0.01 OrthoFinder
Cre01.g031050 30788604 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Dusal.0156s00019.1 33189036 NGN domain; Spt5 transcription elongation factor,... 0.02 OrthoFinder
OT_06G03380.1 No alias Spt5 transcription elongation factor, N-terminal; KOW;... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR022581 Spt5_N 181 274
IPR005100 NGN-domain 280 364
No external refs found!