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  5. XM_003061861.1

XM_003061861.1 (MicpuC2_44758, 44758)


Aliases : MicpuC2_44758, 44758

Description : rRNA-processing arch domain; Helicase, C-terminal; ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061861.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.108 tig00020723_g13518.t1 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder
Cre01.g027150 30789072 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder
Cre02.g117900 30785394 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder
Cre06.g289950 30779809 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.0199s00002.1 33199095 ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH... 0.02 OrthoFinder
EOD25937 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.04 OrthoFinder
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.03 OrthoFinder
OT_06G03030.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.1 OrthoFinder
PTI_28G01510.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.06 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.03 OrthoFinder
Vocar.0001s0944.1 32886100 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.02 OrthoFinder
Vocar.0009s0027.1 32893340 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.08 OrthoFinder
XM_002506163.1 MICPUN_88392, 88392 ATP-dependent RNA helicase Ski2, C-terminal;... 0.05 OrthoFinder
lcl|BLLF01004163.1_cds_GFH29062.1_23539 HaLaN_27657, GFH29062 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05917.1_5938 PRW05917 Superkiller viralicidic activity 2-like 2 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 803 974
IPR001650 Helicase_C 388 468
IPR025696 rRNA_proc-arch_dom 523 775
IPR011545 DEAD/DEAH_box_helicase_dom 60 205
No external refs found!