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  5. Cpa|evm.model.tig00000194.27

Cpa|evm.model.tig00000194.27 (tig00000194_g14753.t1)


Aliases : tig00000194_g14753.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS28 component


Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000194.27
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cre12.g510450 30792329, RPS28 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
EOD20419 No alias Ribosomal protein S28e [Interproscan]. 0.12 OrthoFinder
EOD23634 No alias Ribosomal protein S28e [Interproscan]. 0.12 OrthoFinder
Sro2078_g313630.1 Contig3499.g27144 40S ribosomal protein S28 0.05 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490545.1_5911 KAA8490545 40S ribosomal protein S28 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 4 65
No external refs found!