XM_003061325.1 (MicpuC2_48200, 48200)


Aliases : MicpuC2_48200, 48200

Description : PROCN domain; PROCT domain; Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding; Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; PRP8 domain IV core; RNA recognition motif, spliceosomal PrP8; JAB1/MPN/MOV34 metalloenzyme domain; PRO8NT domain [Interproscan].


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061325.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.136 tig00000093_g3562.t1 Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000093.137 tig00000093_g3562.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cre01.g016050 30789071, PRP8 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Dusal.0327s00002.1 33200457 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.03 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.02 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.02 OrthoFinder
lcl|BLLF01000102.1_cds_GFH07545.1_2022 HaLaN_02363, GFH07545 MPN domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60964.1_258 PRW60964 Pre-mRNA-processing-splicing factor 8 isoform A 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006839 mitochondrial transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
BP GO:0030150 protein import into mitochondrial matrix IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
CC GO:0035145 exon-exon junction complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065002 intracellular protein transmembrane transport IEP Enrichment
BP GO:0070585 protein localization to mitochondrion IEP Enrichment
BP GO:0071806 protein transmembrane transport IEP Enrichment
BP GO:0072655 establishment of protein localization to mitochondrion IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
BP GO:1990542 mitochondrial transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 2086 2184
IPR019581 Prp8_U5-snRNA-bd 1196 1329
IPR012591 PRO8NT 39 190
IPR019580 Prp8_U6-snRNA-bd 1428 1586
IPR012984 PROCT 2198 2307
IPR021983 PRP8_domainIV 1746 1974
IPR019582 RRM_spliceosomal_PrP8 972 1062
IPR012592 PROCN 382 787
No external refs found!