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  5. Cpa|evm.model.tig00000194.26

Cpa|evm.model.tig00000194.26 (tig00000194_g14752.t1)


Aliases : tig00000194_g14752.t1

Description : Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana


Gene families : OG_01_0002304 (OrthoFinder) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000194.26
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cre14.g618860 30776654 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cz03g19100.t1 No alias Helicase/SANT-associated domain; SNF2-related,... 0.02 OrthoFinder
EOD19494 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.05 OrthoFinder
PTI_08G02450.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
Sro757_g197940.1 Contig322.g4283 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.01 OrthoFinder
TP11G01810.1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.05 OrthoFinder
Transcript_contig_78945 78945 Hypothetical protein 0.02 OrthoFinder
Vocar.0021s0130.1 32895939 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
XM_002504492.1 MICPUN_104934, 104934 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61597.1_385 PRW61597 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform A 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61598.1_386 PRW61598 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform B 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500058.1_9011 KAA8500058 Putative DNA helicase INO80 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 647 797
IPR014012 HSA_dom 237 303
No external refs found!