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  5. XM_003061213.1

XM_003061213.1 (MicpuC2_41358, 41358)


Aliases : MicpuC2_41358, 41358

Description : Helicase, C-terminal; Domain of unknown function DUF4217; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061213.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.09 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.04 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.07 OrthoFinder
Cz14g21220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.05 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
PTI_09G03560.1 No alias Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
PTI_11G00580.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.05 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.05 OrthoFinder
Sro967_g225820.1 Contig1083.g10521 Dependent RNA helicase 0.04 OrthoFinder
TP03G01160.1 No alias Domain of unknown function DUF4217; Helicase,... 0.02 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.03 OrthoFinder
Transcript_contig_138 138 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.02 OrthoFinder
UNPLg00619.t1 No alias Hypothetical protein 0.02 OrthoFinder
Vocar.0072s0011.1 32898787 Domain of unknown function DUF4217; DEAD/DEAH box... 0.02 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.08 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.09 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.13 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60362.1_4133 PRW60362 DEAD-box ATP-dependent RNA helicase 17 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59153.1_7055 PRW59153 ATP-dependent RNA helicase HAS1 0.07 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498279.1_7232 KAA8498279 ATP-dependent RNA helicase HAS1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 218 297
IPR011545 DEAD/DEAH_box_helicase_dom 93 216
IPR025313 DUF4217 338 397
No external refs found!