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  5. XM_003061132.1

XM_003061132.1 (MicpuC2_44623, 44623)


Aliases : MicpuC2_44623, 44623

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001221 (OrthoFinder) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061132.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021122.18 tig00021122_g18449.t1 DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g505200 30792990 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.06 OrthoFinder
Cz02g41230.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD20644 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_12G00590.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
PTI_14G02610.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Sro82_g043770.1 Contig4032.g30968 Dependent RNA helicase 0.07 OrthoFinder
Transcript_contig_56905 56905 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0016s0296.1 32898205 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.03 OrthoFinder
XM_002503117.1 MICPUN_83132, 83132 Dead-box ATP-dependent RNA helicase 0.07 OrthoFinder
XM_002507248.1 MICPUN_107362, 107362 Dead-box ATP-dependent RNA helicase (DDX49) 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56671.1_9850 PRW56671 DEAD-box ATP-dependent RNA helicase 10 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 246 349
IPR011545 DEAD/DEAH_box_helicase_dom 40 206
No external refs found!