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  5. XM_003061076.1

XM_003061076.1 (MicpuC2_19538, 19538)


Aliases : MicpuC2_19538, 19538

Description : Photosystem II 13kD protein, chloroplast precursor (PSBW1)


Gene families : OG_01_0005372 (OrthoFinder) Phylogenetic Tree(s): OG0005372_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061076.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre10.g440450 30790206, PSB28 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder
Cz13g07140.t1 No alias Photosystem II Psb28, class 1 [Interproscan]. 0.03 OrthoFinder
Sro1425_g271500.1 Contig1471.g13478 II reaction center PSB28 protein 0.03 OrthoFinder
Sro374_g129320.1 Contig347.g4693 II reaction center PSB28 protein 0.02 OrthoFinder
Vocar.0001s1283.1 32884980 Photosystem II Psb28, class 1 [Interproscan]. 0.05 OrthoFinder
XM_002503059.1 MICPUN_82984, 82984 Photosystem II 13kD protein, chloroplast precursor (PSBW1) 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0034357 photosynthetic membrane IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
CC GO:0042651 thylakoid membrane IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 43 148
No external refs found!