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  5. XM_003060411.1

XM_003060411.1 (MicpuC2_60299, 60299)


Aliases : MicpuC2_60299, 60299

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003060411.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 OrthoFinder
Cre10.g466450 30789814 No description available 0.11 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
EOD18277 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
EOD39665 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
OT_04G04950.1 No alias RNA recognition motif domain [Interproscan]. 0.08 OrthoFinder
OT_05G05100.1 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
PTI_22G00530.1 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.1 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.11 OrthoFinder
Transcript_contig_57231 57231 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0408.1 32891271 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0029s0122.1 32887292 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_002505110.1 MICPUN_102989, 102989 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59230.1_7321 PRW59230 Nucleolin 1-like isoform X2 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 99 166
IPR000504 RRM_dom 206 277
No external refs found!