XM_003060275.1 (MicpuC2_45705, 45705)

Aliases : MicpuC2_45705, 45705

Description : Ribosomal protein L6, alpha-beta domain [Interproscan].

Gene families : OG_01_0002270 (OrthoFinder) Phylogenetic Tree(s): OG0002270_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003060275.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
Cre09.g415950	30781212, PRPL6	Protein biosynthesis.organelle translation...	0.09	OrthoFinder
Cz10g03060.t1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.07	OrthoFinder
Dusal.0148s00001.1	33200410	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.03	OrthoFinder
OT_15G02320.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.05	OrthoFinder
Sro51_chlor_g029620.1	Rpl6	Rpl6	0.05	OrthoFinder
Sro884_mit_g215700.1	Rpl6	Rpl6	0.05	OrthoFinder
TPCG02600.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.04	OrthoFinder
Transcript_contig_53884	53884	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.02	OrthoFinder
Vocar.0011s0204.1	32895344	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.06	OrthoFinder
XM_002505251.1	MICPUN_92039, 92039	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.09	OrthoFinder
lcl\|BLLF01001465.1_cds_GFH19448.1_13925	HaLaN_16394, GFH19448	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.03	OrthoFinder
lcl\|LHPG02000015.1_cds_PRW34061.1_2806	PRW34061	50S ribosomal chloroplastic	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Enrichment
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Enrichment
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006497	protein lipidation	IEP	Enrichment
BP	GO:0006505	GPI anchor metabolic process	IEP	Enrichment
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Enrichment
BP	GO:0006771	riboflavin metabolic process	IEP	Enrichment
MF	GO:0008312	7S RNA binding	IEP	Enrichment
MF	GO:0008320	protein transmembrane transporter activity	IEP	Enrichment
BP	GO:0008610	lipid biosynthetic process	IEP	Enrichment
BP	GO:0009231	riboflavin biosynthetic process	IEP	Enrichment
BP	GO:0009306	protein secretion	IEP	Enrichment
CC	GO:0009349	riboflavin synthase complex	IEP	Enrichment
CC	GO:0009507	chloroplast	IEP	Enrichment
CC	GO:0009536	plastid	IEP	Enrichment
MF	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	IEP	Enrichment
MF	GO:0016987	sigma factor activity	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	Enrichment
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Enrichment
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0043631	RNA polyadenylation	IEP	Enrichment
BP	GO:0044255	cellular lipid metabolic process	IEP	Enrichment
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Enrichment
CC	GO:0048500	signal recognition particle	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment
BP	GO:0071692	protein localization to extracellular region	IEP	Enrichment
MF	GO:0140318	protein transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	52	123
IPR020040	Ribosomal_L6_a/b-dom	131	205

External Links

No external refs found!

XM_003060275.1 (MicpuC2_45705, 45705)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation