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  5. XM_003059475.1

XM_003059475.1 (MicpuC2_18184, 18184)


Aliases : MicpuC2_18184, 18184

Description : AAA+ ATPase domain; Helicase, C-terminal; Helicase-associated domain; Domain of unknown function DUF1605 [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003059475.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000796.23 tig00000796_g4246.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder
Cre07.g329150 30774611 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
Cre07.g352251 30775310 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz05g31260.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
EOD22735 No alias Helicase-associated domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.04 OrthoFinder
OT_05G03840.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.05 OrthoFinder
PTI_05G02970.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.07 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.06 OrthoFinder
TP13G03460.1 No alias Domain of unknown function DUF1605; Helicase-associated... 0.02 OrthoFinder
Vocar.0017s0041.1 32891358 Domain of unknown function DUF1605; Helicase,... 0.03 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.09 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 KAA8492270 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003593 AAA+_ATPase 72 187
IPR001650 Helicase_C 380 481
IPR011709 DUF1605 740 828
IPR007502 Helicase-assoc_dom 543 669
No external refs found!