XM_003059453.1 (MicpuC2_40215, 40215)


Aliases : MicpuC2_40215, 40215

Description : DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp [Interproscan].


Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003059453.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021616.10 tig00021616_g22915.t1 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre05.g235750 30783291, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre09.g397845 30781329 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz04g14260.t1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.07 OrthoFinder
EOD36720 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.05 OrthoFinder
OT_04G02070.1 No alias DNA mismatch repair protein MutS-like, N-terminal; DNA... 0.03 OrthoFinder
OT_06G02660.1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.05 OrthoFinder
Sro151_g069170.1 Contig294.g3843 Methyltransferase domain; Protein of unknown function... 0.02 OrthoFinder
Vocar.0003s0463.1 32889088 DNA mismatch repair protein MutS, C-terminal; DNA... 0.03 OrthoFinder
XM_002508776.1 MICPUN_62040, 62040 DNA mismatch repair protein MutS-like, N-terminal; DNA... 0.05 OrthoFinder
lcl|BLLF01000432.1_cds_GFH11752.1_6229 HaLaN_07305, GFH11752 Protein of unknown function DUF3419 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 786 1120
IPR000432 DNA_mismatch_repair_MutS_C 1189 1378
IPR007861 DNA_mismatch_repair_MutS_clamp 988 1079
IPR007695 DNA_mismatch_repair_MutS-lik_N 482 595
No external refs found!