XM_003059453.1 (MicpuC2_40215, 40215)

Aliases : MicpuC2_40215, 40215

Description : DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, clamp [Interproscan].

Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003059453.1
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021616.10	tig00021616_g22915.t1	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cre05.g235750	30783291, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.05	OrthoFinder
Cre09.g397845	30781329	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cz04g14260.t1	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.07	OrthoFinder
EOD36720	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.05	OrthoFinder
OT_04G02070.1	No alias	DNA mismatch repair protein MutS-like, N-terminal; DNA...	0.03	OrthoFinder
OT_06G02660.1	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.05	OrthoFinder
Sro151_g069170.1	Contig294.g3843	Methyltransferase domain; Protein of unknown function...	0.02	OrthoFinder
Vocar.0003s0463.1	32889088	DNA mismatch repair protein MutS, C-terminal; DNA...	0.03	OrthoFinder
XM_002508776.1	MICPUN_62040, 62040	DNA mismatch repair protein MutS-like, N-terminal; DNA...	0.05	OrthoFinder
lcl\|BLLF01000432.1_cds_GFH11752.1_6229	HaLaN_07305, GFH11752	Protein of unknown function DUF3419 [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0003689	DNA clamp loader activity	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Enrichment
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005663	DNA replication factor C complex	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006275	regulation of DNA replication	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006862	nucleotide transport	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Enrichment
MF	GO:0015301	anion:anion antiporter activity	IEP	Enrichment
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Enrichment
BP	GO:0015748	organophosphate ester transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
CC	GO:0016272	prefoldin complex	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Enrichment
MF	GO:0016746	acyltransferase activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0019207	kinase regulator activity	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
MF	GO:0019887	protein kinase regulator activity	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
MF	GO:0043015	gamma-tubulin binding	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
MF	GO:0061608	nuclear import signal receptor activity	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Enrichment
MF	GO:0140323	solute:anion antiporter activity	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007696	DNA_mismatch_repair_MutS_core	786	1120
IPR000432	DNA_mismatch_repair_MutS_C	1189	1378
IPR007861	DNA_mismatch_repair_MutS_clamp	988	1079
IPR007695	DNA_mismatch_repair_MutS-lik_N	482	595

External Links

No external refs found!

XM_003059453.1 (MicpuC2_40215, 40215)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation