XM_003058637.1 (MicpuC2_17541, 17541)

Aliases : MicpuC2_17541, 17541

Description : Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].

Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003058637.1
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00022075.50	tig00022075_g23611.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder
Cre01.g007051	30788581	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder
Cre06.g273600	30779902, RPS27a	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder
Cz09g22150.t1	No alias	Ribosomal protein S27a [Interproscan].	0.13	OrthoFinder
Cz11g28020.t1	No alias	Ubiquitin-like domain [Interproscan].	0.04	OrthoFinder
Cz13g16210.t1	No alias	Ubiquitin-like domain [Interproscan].	0.05	OrthoFinder
Dusal.0222s00011.1	33201848	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.07	OrthoFinder
Dusal.0808s00008.1	33188936	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.02	OrthoFinder
EOD24536	No alias	Ribosomal protein L41; Ubiquitin-like domain [Interproscan].	0.04	OrthoFinder
EOD32212	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.07	OrthoFinder
EOD34096	No alias	Ribosomal protein L41; Ubiquitin-like domain [Interproscan].	0.04	OrthoFinder
OT_07G00910.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.11	OrthoFinder
OT_08G01740.1	No alias	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.13	OrthoFinder
PTI_07G02070.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.1	OrthoFinder
Sro2967_g341140.1	Contig4428.g33229	Polyubiquitin (Fragment)	0.01	OrthoFinder
Sro305_g112730.1	Contig560.g7114	Polyubiquitin (Fragment)	0.15	OrthoFinder
Sro490_g153470.1	Contig328.g4367	Polyubiquitin (Fragment)	0.15	OrthoFinder
TP05G02210.1	No alias	Ubiquitin-like domain; Ribosomal protein S27a [Interproscan].	0.09	OrthoFinder
Vocar.0002s0346.1	32890766	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.08	OrthoFinder
Vocar.0009s0373.1	32893174	Ubiquitin-like domain [Interproscan].	0.03	OrthoFinder
XM_002501154.1	MICPUN_90428, 90428	Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].	0.15	OrthoFinder
XM_002503017.1	MICPUN_82590, 82590	Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].	0.09	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60289.1_4387	PRW60289	Ubiquitin-40S ribosomal S27a	0.07	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56465.1_9834	PRW56465	Ubiquitin-60S ribosomal L40	0.05	OrthoFinder
lcl\|LHPG02000009.1_cds_PRW56057.1_9988	PRW56057	Polyubiquitin	0.02	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497057.1_786	KAA8497057	Ubiquitin-like protein 1-40S ribosomal protein S27a	0.11	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493558.1_4320	KAA8493558	Ubiquitin-60S ribosomal protein L40-2	0.09	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004181	metallocarboxypeptidase activity	IEP	Enrichment
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0005261	cation channel activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006553	lysine metabolic process	IEP	Enrichment
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
MF	GO:0008235	metalloexopeptidase activity	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Enrichment
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Enrichment
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Enrichment
BP	GO:0009085	lysine biosynthetic process	IEP	Enrichment
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Enrichment
MF	GO:0015252	proton channel activity	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0031369	translation initiation factor binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
MF	GO:0032977	membrane insertase activity	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Enrichment
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0046451	diaminopimelate metabolic process	IEP	Enrichment
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Enrichment
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR001975	Ribosomal_L40e	78	98

External Links

No external refs found!

XM_003058637.1 (MicpuC2_17541, 17541)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation